{"took": 8, "timed_out": false, "_shards": {"total": 5, "successful": 5, "skipped": 0, "failed": 0}, "hits": {"total": 138417, "max_score": 7.581659, "hits": [{"_index": "study", "_type": "docs", "_id": "Iwu6gZUBWrv14Z5vqhG5", "_score": 7.581659, "_source": {"Authoritative Source URL": "OSD-751/", "Flight Program": "International Space Station (ISS)", "Mission": {"End Date": "10/25/2014", "Start Date": "09/21/2014", "Name": "SpaceX-4"}, "Material Type": "Cortex", "Project Identifier": "RR-1", "Accession": "OSD-751", "Identifiers": "LSDS-112     GLDS-687", "Study Identifier": "OSD-751", "Study Protocol Name": "Animal Husbandry     sample collection     Assay Information     ECLIA Procedure     ALSDA Transformed Data", "Study Assay Technology Type": "ECLIA", "Acknowledgments": "", "Study Assay Technology Platform": "MESO-QuickPlex SQ-120MM", "Study Person": {"Last Name": "Roy Haddad Rodriguez Saju Roy Gil Keane Scott Mao de Rivero Vaccari", "Middle Initials": " A. W. T. W.", "First Name": "Upal Roey Angel Alen Deepa Mario Robert Ryan Xiao Juan Pablo"}, "Study Protocol Type": "Animal Husbandry     sample collection     Assay Information     ECLIA Procedure     data transformation", "Space Program": "NASA", "Study Title": "Effects of Space Flight on Inflammasome Activation in the Brain of Mice (Cortex; ECLIA)", "Study Factor Type": "Space Flight", "Study Public Release Date": 1741564800.0, "Parameter Value": "", "thumbnail": "/geode-py/ws/studies/OSD-751/image", "Study Factor Name": "Spaceflight", "Study Assay Measurement Type": "Immunoassay", "Project Type": "Spaceflight Study", "Factor Value": "", "Data Source Accession": "", "Project Title": "Role of DJ1 protein in dopamine dysregulation of the brain in spaceflight condition", "Study Funding Agency": "This project was supported by a grant from NASA (NASA-MUREP) to UR and JPdRV.Tissues were awarded to UR by the NASA Biological Institutional Scientific Collection (NBISC).", "Study Protocol Description": "C57BL/6 female mice (16-week-old, Jackson Labs) were flown to the ISS as part of NASA\u2019s 1st RR-1 on SpaceX-4 CRS-4 Dragon cargo spacecraft. During flight, animals were kept at an ambient temperature of 26 to 28C in a 12-hour light and dark cycle. Flight animals received water and a food bar diet specifically designed by NASA ad libitum. RR-1 mission animals were on board of the Dragon capsule for 4 days (transit time) and then spent 37 days in the ISS. Animals in the vivarium group were control animals that were housed under standard laboratory conditions. In addition, animals in the baseline group consisted of mice from the same cohorts as the flight mice that were sacrificed at the time of launch.     Within 4 hours of splashdown, flight and ground control animals were sacrificed and brains were removed and dissected. For the study focusing on the forebrain, microdissections of the entire hippocampus and primary motor cortex were performed following well-established rodent brain microdissection protocols, and a brain atlas served as a reference to ensure accuracy of brain region identification. Following brain dissection, samples were stored at \u221280 degrees Celsius until further analysis. Tissues used in this study consisted of the brain cortex. Brain tissue samples were obtained from by the authors through an award from the NASA Biological Institutional Scientific Collection (NBISC).     Using protein lysates, a V-PLEX ECLIA kit (MSD) was used to measure the inflammatory profile in the different brain sections using the MESO-QuickPlex SQ-120MM (MSD).     Briefly, to measure the protein levels of TNF-alpha, IL-2, IFN-gamma, IL-5, IL-6, IL-12p70 and IL-10., after washing steps, the plate was incubated overnight with 50 uL of samples. The following day, after washing steps, samples were incubated in detection antibody for 2\u2009hrs followed by 3 more washings steps and addition of 2X Read Buffer. After obtaining the quantity of protein in pg/mL using using the MESO-QuickPlex SQ-120MM, samples were then normalized to total protein loaded.     To enable maximal data reuse (for machine-readable approaches), the submitted version of this dataset was subsequently transformed and edited to be aligned with a reusable template, which was created through feedback provided by subject matter experts in the ALSDA Analysis Working Group. This transformed reusable version is structured so all results are standardized into specific rows (source/subject) and columns (measures). This enables all assay results to be identically structured for efficient data mining. The transformed column headers and the submitted term from which they derive are defined in the study data dictionary file.", "Experiment Platform": "RR-1 Flight Hardware", "Characteristics": "", "Study Grant Number": "", "Study Publication Author List": "Roy U  Hadad R  Rodriguez AA  Saju A  Roy D  Gil M  Keane RW  Scott RT  Mao XW  de Rivero Vaccari RVJP.", "Project Link": "https://osdr.nasa.gov/bio/repo/data/experiments/OS-878", "Study Publication Title": "Effects of Space Flight on Inflammasome Activation in the Brain of Mice", "Managing NASA Center": "Ames Research Center (ARC)", "Study Description": "Space exploration exposes astronauts to stressors that alter the immune response, rendering them vulnerable to infections and diseases. In this study, we aimed to determine the levels of inflammasome activation in the brains of mice that were housed in the International Space Station (ISS) for 37 days. C57BL/6 mice were launched to the ISS as part of NASA\u2019s Rodent Research 1 Mission on SpaceX-4 CRS-4 Dragon cargo spacecraft from September 21st, 2014, to October 25th, 2014. Dissected mouse brains from that mission were analyzed by immunoblotting of inflammasome signaling proteins and Electrochemiluminescence Immunoassay (ECLIA) for inflammatory cytokine levels. Our data indicate decreased inflammasome activation in the brains of mice that were housed in the ISS for 37 days when compared to the brains of mice that were maintained on the ground, and in mice corresponding to the baseline group that were sacrificed at the time of launching of SpaceX-4. Moreover, we did not detect any significant changes in the expression levels of the pro-inflammatory cytokines TNF-alpha, IL-2, IFN-gamma, IL-5, IL-6, IL-12p70 and IL-10 between the ground control and the flight groups. Together, these studies suggest that spaceflight results in a decrease in the levels of innate immune signaling molecules that govern inflammasome signaling in the brain of mice. This dataset derives results from the ECLIA assay using brain tissue.", "organism": "Mus musculus", "Data Source Type": "alsda     cgene", "ESA Acronym": ""}, "highlight": {"all": ["Animal Husbandry     sample collection     Assay Information     ECLIA Procedure     <em>ALSDA</em> Transformed", "with a reusable template, which was created through feedback provided by subject matter experts in the <em>ALSDA</em>", "<em>alsda</em>     <em>cgene</em>"]}}, {"_index": "study", "_type": "docs", "_id": "IbhMaIsBzWEMXzYGBfl2", "_score": 7.099609, "_source": {"Space Program": "NASA, CSA", "Flight Program": "", "Study Assay Measurement Type": "Bone Microstructure", "Study Protocol Description": "For the hindlimb suspension (HLS) experiments, the hindlimbs of male GSK3mKD and GSK3flox (4\u20136 month old) mice were suspended using a taping method where the tails of mice were taped to a copper ring attached to a steel bar that was mounted on top of a modified mouse cage. For these experiments, mice were pair-housed in the cages and had as libitum access to food and water.     HLS mice were subjected to anesthesia under isoflurane for in vivo DXA scanning.     A small animal DXA scanner (OsteoSys InSIGHT, Scintica) was used to scan the individual femur bones collected from the RR9 mission. Overall coefficient of variation of our analysis was 1.7% for BMD and 3.2% for BMC. In addition, we also performed region-specific BMD analysis for the tibia, femur, and lumbar spine from mobile and HLS GSK3mKD and GSK3flox mice.     To enable maximal data reuse (for machine-readable approaches), the submitted version of this dataset was subsequently transformed and edited to be aligned with a reusable template, which was created through feedback provided by subject matter experts in the ALSDA Analysis Working Group. This transformed reusable version is structured so all results are standardized into specific rows (source/subject) and columns (measures). This enables all assay results to be identically structured for efficient data mining.", "Material Type": "Lumbar Spine", "Study Identifier": "OSD-661", "Study Person": {"First Name": "Ryan W. Jessica L. Briana L. Jenalyn L. Mia S. Colton J.F. Nigel Holt N. Kennedy C. Adam J. Guillemette Fabrice William Rene Wendy E. Val A.", "Middle Initials": "", "Last Name": "Baranowski Braun Hockey Yumol Geromella Watson Kurgan Messner Whitley MacNeil Gauquelin-Koch Bertile Gittings Vandenboom Ward Fajardo"}, "ESA Acronym": "", "Acknowledgments": "", "Managing NASA Center": "Ames Research Center (ARC)", "Data Source Type": "alsda", "Mission": {"Start Date": "", "End Date": "", "Name": ""}, "Study Grant Number": "", "Experiment Platform": "Hindlimb Unloading", "Study Factor Name": "Hindlimb Unloading     Genotype", "Study Publication Author List": "Baranowski RW  Braun JL  Hockey BL  Yumol JL  Geromella MS  Watson CJ  Kurgan N  Messner HN  Whitley KC  MacNeil AJ  Gauquelin-Koch G  Bertile F  Gittings W  Vandenboom R  Ward WE  Fajardo VA.", "Study Assay Technology Platform": "osteosys insight", "Authoritative Source URL": "OSD-661/", "Project Identifier": "GROUND-2, Hindlimb_Unloading", "thumbnail": "/geode-py/ws/studies/OSD-661/image", "Project Title": "", "Study Public Release Date": 1698192000.0, "Project Link": "", "Study Publication Title": "Toward countering muscle and bone loss with spaceflight: GSK3 as a potential target", "organism": "Mus musculus", "Accession": "OSD-661", "Study Assay Technology Type": "Dual-Energy X-Ray Absorptiometry", "Study Title": "Toward countering muscle and bone loss with spaceflight: GSK3 as a potential target (Lumbar Spine, HLS, DXA Scanning)", "Study Protocol Type": "Animal Husbandry     sample treatment protocol     Scan     data transformation", "Project Type": "Ground Study", "Study Funding Agency": "This work was supported by a Brock University Vice President Research Discretionary Fund (to VAF), a CRC Tier 2 Award (to VAF), a Canadian Space Agency Grant (to VAF and WEW), as well as an NSERC Discovery Grants (to VAF, WEW, and AJM). BH and CJFW were supported by an Ontario Graduate Scholarship. JLB was supported by a CIHR CGS-D award.", "Study Factor Type": "Hindlimb Suspension     Genotype", "Factor Value": "", "Study Description": "We examined the effects of ~30 days of spaceflight on glycogen synthase kinase 3 (GSK3) content and inhibitory serine phosphorylation in murine muscle and bone samples from four separate missions (BION-M1, Rodent Research RR1, RR9, and RR18). Spaceflight reduced GSK3b content across all missions, whereas its serine phosphorylation was elevated with RR18 and BION-M1. The reduction in GSK3b was linked to the reduction in type IIA fibers commonly observed with spaceflight as these fibers are particularly enriched with GSK3. We then tested the effects of inhibiting GSK3 before this fiber type shift, and we demonstrate that muscle-specific Gsk3 knockdown increased muscle mass, preserved muscle strength, and promoted the oxidative fiber type with Earth-based hindlimb unloading. In bone, GSK3 activation was enhanced after spaceflight; and strikingly, muscle-specific Gsk3 deletion increased bone mineral density in response to hindlimb unloading. Thus, future studies should test the effects of GSK3 inhibition during spaceflight. This study derives results from the DXA Scanning assay using lumbar spine tissue from HLS mice. The lumbar spine data in this study are related to other studies using tissues from the same experiment; OSD-654 (tibia), OSD-660 (tibialis anterior), OSD-662 (soleus), OSD-663 (femur), and OSD-664 (extensor digitorum longus).", "Study Protocol Name": "Animal Husbandry     Treatment Protocol     DEXA Scan     ALSDA Transformed Data", "Characteristics": "", "Parameter Value": "", "Identifiers": "LSDS-69", "Data Source Accession": ""}, "highlight": {"all": ["with a reusable template, which was created through feedback provided by subject matter experts in the <em>ALSDA</em>", "<em>alsda</em>", "Animal Husbandry     Treatment Protocol     DEXA Scan     <em>ALSDA</em> Transformed Data"]}}, {"_index": "study", "_type": "docs", "_id": "waH4TIYBz4EQh6o3gbun", "_score": 6.861099, "_source": {"Authoritative Source URL": "OSD-489/", "Flight Program": "International Space Station (ISS)", "Mission": {"End Date": "10/25/2014", "Start Date": "09/21/2014", "Name": "SpaceX-4"}, "Material Type": "lumbar vertebra 4", "Project Identifier": "RR-1", "Accession": "OSD-489", "Identifiers": "GLDS-489     LSDS-15", "Study Identifier": "OSD-489", "Study Protocol Name": "sample collection     Image Scan Acquisition     Animal Husbandry     ALSDA Processed Data     Image Processing And Reconstruction     radiation dosimetry", "Study Assay Technology Type": "Micro-Computed Tomography", "Acknowledgments": "", "Study Assay Technology Platform": "Bruker SkyScan", "Study Person": {"Last Name": "Dube\u00e9 Scott Thomas Pendleton Alwood", "Middle Initials": "B. T. J. M. S.", "First Name": "Parker Ryan Nicholas Megan Joshua"}, "Study Protocol Type": "sample collection     Image Scan Acquisition     Animal Husbandry     data transformation     Image Processing And Reconstruction     chronic", "Space Program": "NASA", "Study Title": "Quantifying Cancellous Bone Structural Changes in Microgravity: Axial Skeleton Results from the RR-1 Mission", "Study Factor Type": "Space Flight", "Study Public Release Date": 1676246400.0, "Parameter Value": "", "thumbnail": "/geode-py/ws/studies/OSD-489/image", "Study Factor Name": "Spaceflight", "Study Assay Measurement Type": "Bone Microstructure", "Project Type": "Spaceflight Study", "Factor Value": "", "Data Source Accession": "ARC00XX146", "Project Title": "Rodent Research 1", "Study Funding Agency": "This study was supported by the Space Life Sciences Training Program at NASA Ames Research Center and a Space Biology PECASE. We thank our colleagues in the Bone and Signaling Lab. Samples were solicited and procured through the NASA Ames Life Sciences Data Archive (now the NASA Biological Institutional Scientific Collection).", "Study Protocol Description": "The RR-1 mice were euthanized by ISS crew with Euthasol injection followed by cervical dislocation, frozen in a pre-chilled Mini Cold Bag (MCB) before transfer to the MELFI freezer (-80 C) and brought back to Earth. Exact matched procedures were held for ground control, vivarium, and basal groups. After vehicle return, dissection of all four groups (flight, baseline, ground, vivarium) were conducted. The returned carcasses were thawed and dissected twice. The first round of carcass dissections, known as the RR1 1st thaw BSP (Biospecimen Sharing Program), spanned a 2-week period in April 2015 and a 1-week period in May 2015. The RR1 2nd thaw BSP was performed in March 2016. BSP samples were dissected, frozen, and then transferred to the Ames Life Sciences Data Archive (ALSDA; now NBISC [NASA Biological Institutional Scientific Collection) for long-term storage. Tissues from forty mice were received for this study, from RR-1 through BSP/ALSDA and lumbar vertebrae (L4) were assessed for cancellous bone by microcomputed tomography. Vertebrae were preserved by wrapping specimens with single 2-ply gauze squares (1/3 of a typical tri-fold gauze pad) and dipped into PBS with Ca2+ and Mg2+. Tissues were stored in labeled specimen containers and placed on ice, and subsequently stored at -20C.     The mCT machine used for this study was a SkyScan 1174, Bruker, Belgium. The scanning was conducted at 6.7 micrometers per pixel, x-ray intensity was 800 miliamperes, and killivolt peak was 50kvp, with frame averaging of 2. A .log file from the scanning, reconstruction, and analysis from this mCT study was submitted and available for data provenance.     This study was approved by by the NASA Ames Research Center Institutional Animal Care and Use Committee (IACUC). Post-pubescent female C57BL/6J mice (16 weeks at launch) were exposed to 37 days of microG flight, after being flown to the ISS, and housed in the Rodent Habitat. Mice of similar age, sex and strain were used for ground controls housed in identical hardware and matching ISS environmental conditions. The mice were acclimated to NASA Rodent Food bars, lixits, and wire floors.     To enable maximal data reuse (for machine-readable approaches), the submitted version of this dataset was subsequently transformed and edited to be aligned with a microCT data reuse template, which was created through feedback provided by subject matter experts in the ALSDA Analysis Working Group. This transformed reusable version is structured so all results are standardized into specific rows (source/subject) and columns (measures). This enables all microCT results to be identically structured for efficient data mining.     An upper/lower threshold approach was used to binarize grayscale images, with a lower gray threshold of 40 and upper gray threshold of 255 (on 0-1000 scale).     The absorbed dose of ionizing radiation received by biological payloads on the International Space Station (ISS) depends on a number of factors, including date and duration of exposure and location of the payload on the ISS. Some of the factors that lead to variations in the absorbed dose rate in orbit are ISS altitude, period during the solar cycle, and location of the sample\u2014the ISS module and the specific location within that module. Shielding effects from the biological payload container or habitat have not been taken into account. The measured absorbed dose can vary based on the dosimetry instrument(s) used. Radiation monitoring on the ISS is not standardized across modules; each international partner has its own suite of instruments, with differing technologies, sensitivities and analysis methodologies, including criteria for distinguishing between lightly ionizing particles (mainly protons) and highly ionizing particles (mainly galactic cosmic ray nuclei). Both active and passive dosimeters are used. Active dosimeters are powered and data are read out and stored and/or telemetered to ground. Some active dosimeters provide additional levels of detail such as time resolution, energy deposition and particle identification. Passive dosimeters are unpowered, record constantly and are read out upon return to the ground. The dose in the metadata is the dose recorded by the radiation detector closest to the sample. In most cases that detector will be in the same ISS module; in cases where data from a detector in the same module are not available, the dose is extrapolated using data from periods where data are available from detectors in multiple modules, including the module containing the payload. The duration of the experiment is defined as the time in space during which the specimen was \u201cliving\u201d, including the time on the delivery vehicle (e.g. SpaceX Dragon). Once the specimen was frozen or fixed, the experiment was considered stopped. Details of ISS dosimetry and a table with doses for all GeneLab ISS experiment ISS datasets are available at https://genelab.nasa.gov/environmental/radiation.", "Experiment Platform": "Rodent Habitat", "Characteristics": "", "Study Grant Number": "Space Life Sciences Training Program at NASA Ames Research Center and a Space Biology PECASE", "Study Publication Author List": "", "Project Link": "https://nlsp.nasa.gov/view/lsdapub/lsda_experiment/7633383e-fe88-5ada-92dd-cd31a50fda32", "Study Publication Title": "", "Managing NASA Center": "Ames Research Center (ARC)", "Study Description": "Objective of this study was to further validate bone degradation in microgravity as site-specific and preferential to weight bearing bone. An objective of this study was to further understand the role of the mechanical environment in controlling the process of bone remodeling, namely local formation and resorption to maintain a healthy structure. These data from the lumbar 4 bones of Rodent Research-1 mission aboard the International Space Station, are unpublished, and were presented at the 2016 meeting of the American Society for Gravitational Space Research. This dataset derives results from the micro\u2013computed tomography (mCT) assay.", "organism": "Mus musculus", "Data Source Type": "alsda", "ESA Acronym": ""}, "highlight": {"all": ["sample collection     Image Scan Acquisition     Animal Husbandry     <em>ALSDA</em> Processed Data     Image", "BSP samples were dissected, frozen, and then transferred to the Ames Life Sciences Data Archive (<em>ALSDA</em>", "Tissues from forty mice were received for this study, from RR-1 through BSP/<em>ALSDA</em> and lumbar vertebrae", "microCT data reuse template, which was created through feedback provided by subject matter experts in the <em>ALSDA</em>", "<em>alsda</em>"]}}, {"_index": "study", "_type": "docs", "_id": "mgp86516", "_score": 6.763824, "_source": {"Space Program": "", "Flight Program": "", "Study Assay Measurement Type": "", "Study Protocol Description": "", "Material Type": "", "Study Identifier": "", "Study Person": {"First Name": "sathiyaraj", "Middle Initials": "", "Last Name": 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